HsaEX0056644 @ hg19
Exon Skipping
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:30381]
Coordinates
chr17:45916810-45918209:-
Coord C1 exon
chr17:45918036-45918209
Coord A exon
chr17:45917557-45917738
Coord C2 exon
chr17:45916810-45917009
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTCCCTCACCTCCAGTGC
3' ss Score
9.85
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
ATGGCGTCGTCGAGCCCTGACTCCCCATGTTCCTGCGACTGCTTTGTCTCCGTGCCCCCGGCCTCAGCCATCCCGGCTGTGATCTTTGCCAAGAACTCGGACCGACCCCGGGACGAGGTGCAGGAGGTGGTGTTTGTCCCCGCAGGCACTCACACTCCTGGGAGCCGGCTCCAG
Seq A exon
TGCACCTACATTGAAGTGGAACAGGTGTCGAAGACGCACGCTGTGATTCTGAGCCGTCCTTCTTGGCTATGGGGGGCTGAGATGGGCGCCAACGAGCATGGTGTCTGCATTGGCAACGAGGCTGTGTGGACGAAGGAGCCAGTTGGGGAGGGGGAAGCCCTGCTGGGCATGGACCTACTCAG
Seq C2 exon
GCTGGCTTTGGAACGGAGCAGCTCTGCCCAGGAGGCCTTGCATGTGATCACAGGGTTACTGGAGCACTATGGGCAGGGGGGCAACTGCCTGGAGGATGCTGCGCCATTCTCCTACCATAGCACCTTCCTGCTGGCTGACCGCACTGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTCTGGGCTGCACAGAGGATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(15.3=62.1)
A:
PF0357710=Peptidase_C69=FE(25.4=100)
C2:
PF0357710=Peptidase_C69=PU(34.5=76.5)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCGACTGCTTTGTCTC
R:
CAGCATCCTCCAGGCAGTTG
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)