RnoEX6049363 @ rn6
Exon Skipping
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84967481-84969359:+
Coord C1 exon
chr10:84967481-84967654
Coord A exon
chr10:84968103-84968284
Coord C2 exon
chr10:84969160-84969359
Length
182 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTCTTTACCTCCAGTGC
3' ss Score
10.89
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGGCATCATCGAGCCCCGACGCCCCTTGTTCCTGCGACTGCTTTGTCTCTGTGCCCCCGGCTTCAGCCATCCCAGCTGTAATCTTTGCAAAGAACTCAGACCGGCCCCGAGATGAAGTCCAGGAGGTGGTGTTTATACCAGCAGGCACTCACACCCCTGGGAGCCGACTTCAG
Seq A exon
TGCACCTACATCGAGGTGGAACAGGTGTGGAAGACGCATGCTGTCATTCTGAGCCGCCCTTCTTGGCTGTGGGGGGCTGAGATGGGTGCCAATGAGCTTGGTGTCTGCATAGGCAACGAAGCGGTGTGGACCAAAGAACCCGTAGGGGAGGGGGAAGCCCTGCTGGGTATGGATCTACTCAG
Seq C2 exon
GCTGGCTTTGGAACGGAGCAGTACTGCCCAGGCGGCTGTGCACGTGATTGCGGGCTTGCTGGACCGCTATGGGCAGGGAGGCAGCTGCCGGGAGGATCCGGAGCCTTTCTGCTATCACAACACCTTTTTACTGGCTGATCGGACAGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTGTGGGCTGCTCAGCGGATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214-'8-3,'8-2,10-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0357710=Peptidase_C69=PU(19.0=59.0)
C2:
PF0357710=Peptidase_C69=FE(35.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGACTGCTTTGTCTCTGTG
R:
TGATAGCAGAAAGGCTCCGGA
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]