DreEX6044224 @ danRer10
Exon Skipping
Gene
ENSDARG00000043497 | scrn2
Description
secernin 2 [Source:ZFIN;Acc:ZDB-GENE-040724-75]
Coordinates
chr20:14775387-14777924:-
Coord C1 exon
chr20:14777762-14777924
Coord A exon
chr20:14777271-14777452
Coord C2 exon
chr20:14775387-14775586
Length
182 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTGTTTTCTATGCAGTGC
3' ss Score
7.79
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATGGCTGAACCACCTCGGTCATGTGACTGTTTTGTATCTCTTCCTCCGGGTTCAAAGGAAGATTATGTGATATTCGGTAAAAACTCTGACCGTCCGCGGGATGAGGTGCAAGAGGTGGTGTATTTCCCAGCGTCTTCACACCCTCCTGCCTCCACTGTGGAG
Seq A exon
TGCACATATATCTCCATTCCTCAAGTGGAGCACACTAATGCAGTGGTGCTGAGCAGACCTGCCTGGCTCTGGGGCGCTGAGATGGGGGCCAATGAACACGGCGTGTGTGTCGGAAATGAGGCCGTCTGGACCAAAGAGCCTGTGAATCCAGAAGAGGCTCTGCTGGGAATGGACCTGGTTCG
Seq C2 exon
GCTGGGTCTGGAGCGAGGGGACAGTGCTCGGGCGGCTCTGAATGTAATCACGGCTCTGCTGGAGCAGTTTGGTCAGGGTGGAGCCTGCAGGGAGACCAGCGAACCCTTTAGTTATCACAACACCTTCTTATTAGTGGACCGACAGGAAGCATGGGTGCTGGAGACTGCTGGGAAACTCTGGGCTGCACAGAAAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043497-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(14.6=63.0)
A:
PF0357710=Peptidase_C69=FE(25.8=100)
C2:
PF0357710=Peptidase_C69=FE(28.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGGTGTATTTCCCAGCG
R:
CTTTCTGTGCAGCCCAGAGTT
Band lengths:
245-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]