BtaEX0031632 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44090741-44098911:+
Coord C1 exon
chr15:44090741-44090870
Coord A exon
chr15:44092024-44092146
Coord C2 exon
chr15:44098786-44098911
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCTGCTGTACTCTTTTGCAGATG
3' ss Score
9.96
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATGGGGGTCGCGGGCCGCGGCTGCCCTAGGGCTGCCCCGGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACGGCGGCCGTCCCGCCCTATCGGGGCCGCGCAGAGGGGCCGCCGGAGG
Seq A exon
ATGTGGACGAGTGTGCCCAGGGGCTAGATGACTGCCATATCAATGCCCTGTGTGAGAACACACCCACCTCCTACAAGTGCTCCTGCAGGCCTGGCTACCAAGGGGAGGGCAGGCAGTGTGAGG
Seq C2 exon
ATATTGATGAATGTGAAAATGAACTCAATGGAGGCTGTGTCCATGACTGTTTGAATATTCCTGGCAATTATCGCTGCACTTGTTTCGATGGCTTCATGCTGGCTCATGATGGTCATAATTGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129472=EGF_3=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGCTGCTGACG
R:
AGACAATTATGACCATCATGAGCCA
Band lengths:
188-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development