MmuEX6013059 @ mm10
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109857521-109865586:-
Coord C1 exon
chr7:109865460-109865586
Coord A exon
chr7:109864105-109864227
Coord C2 exon
chr7:109857521-109857646
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTTGCTGTGTTCTTTTGCAGATG
3' ss Score
12.78
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATGGGGGTCGCGGGTTGCGGTCGGCCTCGGGAAGCCCGGGCGCTGTTGCTGCTGCTGCTGCTGCTGCCGCCGCTGCTGGCCGCCGCCGTCCCTCCCGACCGGGGTCTCACCAACGGGCCGTCCGAGG
Seq A exon
ATGTGGATGAGTGTGCCCAAGGGCTCGATGACTGCCATGCTGATGCACTGTGTCAGAACACACCCACTTCCTACAAGTGCTCTTGCAAGCCTGGCTACCAAGGGGAAGGCAGGCAGTGTGAGG
Seq C2 exon
ACATGGATGAATGTGACAACACACTCAACGGAGGCTGTGTCCACGACTGTTTAAATATTCCAGGCAACTATCGCTGCACCTGTTTCGATGGCTTCATGTTGGCTCATGATGGTCATAATTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTGCTGCTGCTGCT
R:
AGACAATTATGACCATCATGAGCCA
Band lengths:
210-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types