GgaEX7005169 @ galGal4
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr5:8927057-8929903:+
Coord C1 exon
chr5:8927057-8927554
Coord A exon
chr5:8928839-8928961
Coord C2 exon
chr5:8929778-8929903
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCTGTCTCTTTGCAGACG
3' ss Score
12.95
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
TAGAATGGCAGCGCTCGGCGCCCGGCCGGGCGGTACGGGCTGGGGGCGGCCCGGCTCCGCGCACCCCGGCCGGGACGCGGCGGCTTCGAGAGCGGCTCCGGCTCCCGCAGGAGAGCGTGCTGCCCGGACACCTGCGCGCCGGGCGGCCGCAGGTGCTGGGAGGGCTTCACGTGGGCGGGGGCCTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGCGCGAGGCGGTCCCGCGGCACCTCCCTCCGCCACCTCCTCCCGCCCGGCAGCGGCAGCGGCAGCCGCGGCGCCGCAGCCTCCGCCGCCGCAGCGCCACCGATGGGGTCCGGCGGCCGCCCGAGCGCGGCGGGGGCGCGGGCGCTGCCGCTGCTGCTCCTGCTGCTGCCCGCGCCGGGCCCCGCCGCCCCGCCGCCGCCCG
Seq A exon
ACGTGGATGAGTGCGCCCTGGGGCTCGATGACTGCCACCCGGATGCCATTTGCCAGAACACCCCCAAGCTGTACAAGTGCATGTGCAAGGTCGGCTTCACCGGCGAAGGGAAGAAATGCGAAG
Seq C2 exon
ACATTGATGAATGCGATAACGACTTCAATGGAGGCTGCGTCCACGAGTGCTTCAACATCCCAGGAAATTACCGCTGTACCTGCTACGACGGCTTTATGTTGGCTCACGATGGCCACAACTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892-'1-2,'1-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129472=EGF_3=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
ENSGALT00000009480fB11745
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCCGCCACCTCCTC
R:
CCTGGGATGTTGAAGCACTCG
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]