DreEX0064639 @ danRer10
Exon Skipping
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28338924-28339926:-
Coord C1 exon
chr7:28339731-28339926
Coord A exon
chr7:28339257-28339373
Coord C2 exon
chr7:28338924-28339049
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTTGTGATACGCAGATC
3' ss Score
6.72
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CTCAGAAGCGCGAAGCCACTGACAAAGTGCGGATGAAAATGAGTGGGACACTCGTGTTAGAGTAAACGCGTGTTGTTGAGTTCGACTCTAAACTCTGAACTGATCACCATGGGAGCTGTTTGGACTGTACGGCTCCTCTGTTTGTTTTTGCTCTTGTTAAACACTCGCCAAAGCGCCGCACTTCCTCACAACACTG
Seq A exon
ATCAATGTGCAGAGGGAAGTGATGCCTGTCACATTGATGCTATTTGTCAAAATACCCCAACTTCATACAAGTGCACTTGCAAAACAGGCTTTAAAGGGGACGGAAAACACTGTGAAG
Seq C2 exon
ACATTGATGAATGTGATGTGGAATACAATGGTGGCTGTGTACACGAATGTAACAACATACCTGGCAATTACCGCTGTACTTGCCTTGATGGGTTTCATTTGGCACATGATGGGCACAACTGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129472=EGF_3=WD(100=90.0)
C2:
PF126622=cEGF=PU(83.3=46.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCGTGTTGTTGAGTTCGA
R:
TGCCCATCATGTGCCAAATGA
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]