RnoEX0078740 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174486983-174495258:-
Coord C1 exon
chr1:174495120-174495258
Coord A exon
chr1:174493832-174493954
Coord C2 exon
chr1:174486983-174487108
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTTGCTGTGTTCTTTTGCAGATG
3' ss Score
12.78
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGGGGGTCGCGGGCTGCGGTCGGCCTTCGGAGGCCCGGGCGCTGCTGCTGCTGCTACTGCTGCTGCTGCCGCCGCCGCTGCCGCTGCTGGCCTCTGCCGTCCCACCCGACCAGGGTCGCACCAACGGGCCGCCCGAGG
Seq A exon
ATGTGGATGAGTGTGCCCAAGGGCTGGATGACTGCCATGCTGATGCACTGTGTCAAAACACACCCACTTCCTACAAGTGCTCTTGTAAGCCTGGCTACCAAGGGGAAGGCAGGCAGTGTGAGG
Seq C2 exon
ACATGGATGAATGTGACAATGCTCTCAATGGAGGCTGTGTCCACGACTGTTTAAACATCCCAGGCAACTATCGCTGCACCTGTTTTGATGGCTTCATGTTGGCTCATGACGGTCATAATTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGCTGCTACTGC
R:
ACAATTATGACCGTCATGAGCCA
Band lengths:
219-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]