BtaEX0031634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44104351-44113506:+
Coord C1 exon
chr15:44104351-44104485
Coord A exon
chr15:44110064-44110189
Coord C2 exon
chr15:44113390-44113506
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCATGCCGCTGTTTTGCAGAGG
3' ss Score
6.75
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACGTGGACGAGTGCCTGGAGAACAATGGCGGCTGCCAGCACACCTGCCTCAACGTCATGGGGAGCTACGAGTGCCGCTGCCAGGAGGGCTTTTTCCTGAGTGACAATCAGCACACGTGCATTCACCGCTCAGAAG
Seq A exon
AGGGTCTGAGCTGCATGAATAAGAATCACGGCTGTAGTCACATCTGCATGGAGGCCCCGAAGGGCAGTGTCGCCTGCGAGTGCAGGCCAGGCTTTGAGCTGGCCAAGAACCAGAGAGACTGCATCT
Seq C2 exon
TGACCTGTAACCATGGAAACGGTGGATGCCAGCACTCCTGTGAAGACACCGCTGAAGGCCCAGAGTGTAGCTGCCATCCTCGGTACAAGATGCACTCGGATGGGAGGAGCTGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGTGCCTGGAGAACAAT
R:
CAGCTCCTCCCATCCGAGTG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development