GgaEX0008326 @ galGal4
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr5:8932547-8937807:+
Coord C1 exon
chr5:8932547-8932681
Coord A exon
chr5:8937185-8937310
Coord C2 exon
chr5:8937691-8937807
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTGTCTGTTTTGCAGAAG
3' ss Score
9.81
5' ss Seq
TTTGTATGC
5' ss Score
-0.42
Exon sequences
Seq C1 exon
ATACAGATGAATGCATGTTCAACAACGGTGGCTGCCAGCACGTTTGTGTCAACACGGTGGGGAGCTATGAGTGTCGCTGTAAGGAAGGCTTCTTTCTCAGTGACAACCAGCACACGTGCATCCACCGCTCAGAAG
Seq A exon
AAGGCATGAGCTGCATGAATAAAGATCATGGCTGTGCACACATCTGCAGAGAAACGCCCAAAGGAGGGGTTGCTTGTGAATGCCGACCAGGATTTGAGCTGTCCAAGAACCAGAGAAGCTGCATTT
Seq C2 exon
TAACCTGTAATCATGGAAATGGTGGCTGTCAACATACATGTGATGATGCTGATAATGGGCCTATTTGTGGATGTCACCCCAAGTACATCATGCATACGGATGGGAAAACCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATGTTCAACAACGGTGG
R:
CCAGGCAGGTTTTCCCATCC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]