RnoEX0078735 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174474847-174481882:-
Coord C1 exon
chr1:174481748-174481882
Coord A exon
chr1:174476074-174476199
Coord C2 exon
chr1:174474847-174474963
Length
126 bp
Sequences
Splice sites
3' ss Seq
TATATGCTACTGTTTTGCAGAGG
3' ss Score
7.11
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGTGGATGAATGCTTGGAGAACAATGGCGGCTGCCAGCACACCTGCACCAACGTCATGGGGAGCTATGAGTGTCGCTGCAAAGAAGGTTTCTTTCTAAGTGACAATCAGCACACTTGCATTCACCGCTCAGAAG
Seq A exon
AGGGCCTGAGCTGTATGAACAAGGATCATGGCTGTGCTCACATCTGCAAAGAGGCCCCGAGAGGCAGCATTGCCTGTGAATGCAGGCCTGGTTTTGAACTGGCCAAAAACCAGAGAGACTGCATCT
Seq C2 exon
TGACCTGTAACCATGGAAATGGTGGGTGTCAGCACTCCTGTGAAGATACTGCAGAAGGCCCCGAGTGTAGCTGCCATCCACACTACAGGTTGCATGCTGATGGGAGAAGCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTGGAGAACAATGGCGG
R:
CTAGGCAGCTTCTCCCATCAG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]