MmuEX6013062 @ mm10
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109843877-109852568:-
Coord C1 exon
chr7:109852434-109852568
Coord A exon
chr7:109846923-109847048
Coord C2 exon
chr7:109843877-109843993
Length
126 bp
Sequences
Splice sites
3' ss Seq
TACACACTACTGTCTTGCAGAAG
3' ss Score
7.27
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATATGGACGAATGCTTGGAGAACAATGGTGGCTGCCAGCACATCTGCACCAACGTTATTGGGAGCTATGAATGTCGCTGCAAAGAAGGTTTCTTTCTAAGTGACAATCAGCACACTTGCATTCACCGCTCAGAAG
Seq A exon
AAGGCCTGAGCTGTATGAACAAGGATCATGGCTGTGGTCACATCTGCAAGGAGGCCCCAAGAGGCAGCGTTGCCTGTGAATGCAGGCCTGGTTTTGAACTGGCCAAAAACCAGAAAGACTGCATCT
Seq C2 exon
TGACTTGTAACCATGGAAATGGTGGGTGTCAGCACTCCTGTGAAGATACAGCAGAAGGCCCTGAGTGTAGTTGCCATCCACGGTATAGGTTGCATGCTGATGGGAGAAGCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-'6-4,'6-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGAATGCTTGGAGAACA
R:
GCTTCTCCCATCAGCATGCAA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types