DreEX0064638 @ danRer10
Exon Skipping
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28333587-28336362:-
Coord C1 exon
chr7:28336228-28336362
Coord A exon
chr7:28333792-28333917
Coord C2 exon
chr7:28333587-28333703
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCATATCTCTTTTTCGCAGAAG
3' ss Score
8.88
5' ss Seq
TCTGTACGT
5' ss Score
4.47
Exon sequences
Seq C1 exon
ATGTGGACGAATGTGTCTTCAACAATGGCGGCTGTCAGCATGTATGTGTCAACACCATGGGAAGCTATGAGTGTCGCTGCAAGCAAGGCTTTTTCCTGAGTGACAATCAGCACACATGCATCCATCGCTCCGTGG
Seq A exon
AAGGCCTGAGCTGCATGAATAAAGAGCATGGCTGTGGTCATATCTGTAAGGAGAGTCCAAAAGGTGGCGTGGCCTGTGAGTGCCGGCCGGGCTTCGAACTGGCCAAGAACCAGCGGGGCTGCATCT
Seq C2 exon
TGACCTGCAACCATGGTAATGGGGGCTGCCAGCACATCTGTGAGGATACCGAGCAGGGGCCAATCTGCAGATGCCACGTCAGGTACATGCTGCACGCAGATGGCAGAACCTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=6.5),PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGTCTTCAACAATGGCGG
R:
TACACAGGTTCTGCCATCTGC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]