BtaEX0031834 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007307 | SELE
Description
Bos taurus selectin E (SELE), mRNA. [Source:RefSeq mRNA;Acc:NM_174181]
Coordinates
chr16:38181978-38184848:-
Coord C1 exon
chr16:38184738-38184848
Coord A exon
chr16:38183853-38183874
Coord C2 exon
chr16:38181978-38182050
Length
22 bp
Sequences
Splice sites
3' ss Seq
TAGTTCTCTTTCTCTTGCAGCAA
3' ss Score
9.64
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTCCGACTGTGTCCCAAACTCCCTTGGCAGTTGGACTTTCTACTGCTGGAGTCTCCCTTGTGACAATACCATCATTTCTCTTCTGGCTTCTGAAACGCCTTCAGAAGAAAG
Seq A exon
CAAAAAAATTTTCTCCTGCCAG
Seq C2 exon
CAGCTGCTCAAGCCTGAAATCCAATGGATGCTACTCAACACCTTCCAAGTTAATTTAAGTCCAAAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007307_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGGAGTCTCCCTTGTG
R:
AGCATCCATTGGATTTCAGGCT
Band lengths:
102-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development