DreEX6046134 @ danRer10
Exon Skipping
Gene
ENSDARG00000009123 | sele
Description
selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
Coordinates
chr20:34068501-34068994:-
Coord C1 exon
chr20:34068872-34068994
Coord A exon
chr20:34068697-34068718
Coord C2 exon
chr20:34068501-34068585
Length
22 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTTTGTTTTCAGCTA
3' ss Score
10.84
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTCAACCTGGTCCCTCTAAATCGCTCTTCAAAGCAACAGAAGTGGCTCTTGGCGTTGCAGGAACTGTCGGCAGCTCCAGTCTGTTCTTAGTCTACTGGATACTGAAGAAACTGAAGAGTAACG
Seq A exon
CTAACAAGTTTAAACTGAACAG
Seq C2 exon
CACTTTGGATACTGTGGATCCACCGCAGGCTTATAAGAGCAGTATTGACAGTCTCCTATAGAGCAAAAGTGCTTCAAACTACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009123-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
83%=75=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGGCGTTGCAGGAACT
R:
TATAAGCCTGCGGTGGATCCA
Band lengths:
113-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]