MmuEX6028812 @ mm10
Exon Skipping
Gene
ENSMUSG00000026582 | Sele
Description
selectin, endothelial cell [Source:MGI Symbol;Acc:MGI:98278]
Coordinates
chr1:164054617-164055749:+
Coord C1 exon
chr1:164054617-164054727
Coord A exon
chr1:164055554-164055575
Coord C2 exon
chr1:164055677-164055749
Length
22 bp
Sequences
Splice sites
3' ss Seq
TAGTTTTCTTTCTCTTGCAGCAA
3' ss Score
9.83
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CCCCAGTCAGCCCCACCCGTCCCTTGGTAGTTGCACTTTCTGCGGCAGGAACCTCACTCCTGACATCGTCCTCATTGCTCTACTTGTTGATGAGATACTTTCGGAAGAAAG
Seq A exon
CAAAGAAATTTGTTCCTGCTAG
Seq C2 exon
CAGCTGCCAAAGCCTTCAATCGTTTGAAAACTACCATGTGCCTTCTTACAACGTCTAGGTTCAAAACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026582-'12-11,'12-10,13-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACTCCTGACATCGTCCT
R:
ACGTTGTAAGAAGGCACATGGT
Band lengths:
114-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types