RnoEX6045128 @ rn6
Exon Skipping
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82362099-82362766:+
Coord C1 exon
chr13:82362099-82362209
Coord A exon
chr13:82362569-82362590
Coord C2 exon
chr13:82362694-82362766
Length
22 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCTTTCTCTTGCAGCAA
3' ss Score
12.36
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CCCCAGCCAACCCTCCCCGTCCCTTGGTAGTGGCACTTTCTGTGGCAGCAACCTCACTTCTGACATTGTCCTCATTGATCTACGTGTTGAAGAGATTCTTTTGGAAGAAAG
Seq A exon
CAAAGAAATTCGTTCCTGCTAG
Seq C2 exon
TAGCTGCCAAAGTCTTCAATCGTTTGAAAACTATCAAGGGCCTTCTTACATCATCTAAGATGCGAGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTTGGTAGTGGCACTTT
R:
ACGATTGAAGACTTTGGCAGCT
Band lengths:
116-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]