HsaEX6034825 @ hg38
Exon Skipping
Gene
ENSG00000007908 | SELE
Description
selectin E [Source:HGNC Symbol;Acc:HGNC:10718]
Coordinates
chr1:169725729-169726806:-
Coord C1 exon
chr1:169726699-169726806
Coord A exon
chr1:169725907-169725928
Coord C2 exon
chr1:169725729-169725801
Length
22 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTTTTCTTTTGCAGCAA
3' ss Score
11.27
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTCCCACTGAGTCCAACATTCCCTTGGTAGCTGGACTTTCTGCTGCTGGACTCTCCCTCCTGACATTAGCACCATTTCTCCTCTGGCTTCGGAAATGCTTACGGAAAG
Seq A exon
CAAAGAAATTTGTTCCTGCCAG
Seq C2 exon
CAGCTGCCAAAGCCTTGAATCAGATGGAAGCTACCAAAAGCCTTCTTACATCCTTTAAGTTCAAAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007908-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTTCTGCTGCTGGACTC
R:
CCATCTGATTCAAGGCTTTGGC
Band lengths:
103-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains