GgaEX6043691 @ galGal4
Exon Skipping
Gene
ENSGALG00000003399 | SELE
Description
selectin E [Source:HGNC Symbol;Acc:HGNC:10718]
Coordinates
chr8:5101982-5102707:+
Coord C1 exon
chr8:5101982-5102089
Coord A exon
chr8:5102552-5102573
Coord C2 exon
chr8:5102683-5102707
Length
22 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTCTTCTTGCAGCAA
3' ss Score
11.9
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTTCTCAACAAGTTGCCTATGTCACTGTAGGCATAGCAGCCACCACTACCTCTCTGCTTGCCACAGCATCATTCCTCTTTTGGCTTGCAAAACGGTTACGGGGAAAAG
Seq A exon
CAAAGAAATTCACTCCTGCCAG
Seq C2 exon
CAGCTGTCAGCACCTCACTACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003399-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
83%=75=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACTGTAGGCATAGCAGC
R:
CAGTAGTGAGGTGCTGACAGC
Band lengths:
112-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]