BtaEX0031892 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020489 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr7:38760217-38762485:+
Coord C1 exon
chr7:38760217-38760372
Coord A exon
chr7:38761775-38761951
Coord C2 exon
chr7:38762345-38762485
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTGTGATCCTGTCATTTTAGATA
3' ss Score
7.64
5' ss Seq
AAAGTGCGT
5' ss Score
5.93
Exon sequences
Seq C1 exon
GCCAGGCTGCTGCGCCGGCTCCACCTCCTTAGAAAAATACACCACCTCCAATGAATTTCCTGACGACACCTTGAATTTCATCAAAACGCACCCGCTCATGGATGAGGCCGTGCCATCCATCATCAACAGGCCATGGTTCCTAAGGACGATGGTCAG
Seq A exon
ATACCGCCTGACCAAAATCGCGGTGGACACCGCTGCTGGCCCGTATCAGAACCACACTGTGGTTTTCCTGGGATCGGAGAAGGGAATCATCTTGAAGTTCTTGGCCAGGACAGGAAACAGTGGTTTCCTAAATGACAGCCTTTTCCTGGAGGAGATGAGCGTTTACAATCCTGAAAA
Seq C2 exon
GTGCAGCTATGACGGAGTAGAAGACAAGAGGATCATGGGCATGCAGCTGGACAAAGCCAGCAGCTTCCTGTATGTTGCATTCTCCACTTGTGTGATCAAGGTTCCCCTTGGCCGGTGTGAGCGGCATGGCAAGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020489-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.9=100)
A:
PF0140314=Sema=FE(13.5=100)
C2:
PF0140314=Sema=PD(3.4=31.2),PF0143720=PSI=PU(13.4=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTCCACCTCCTTAGAAA
R:
GGAACCTTGATCACACAAGTGGA
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development