DreEX6066451 @ danRer10
Exon Skipping
Gene
ENSDARG00000011533 | sema6dl
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
Coordinates
chr18:40386845-40389899:+
Coord C1 exon
chr18:40386845-40387000
Coord A exon
chr18:40389252-40389425
Coord C2 exon
chr18:40389759-40389899
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTTTTTTTTGTAGGTA
3' ss Score
12.11
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ACCTGGCTGCTGTGCAGGACACGGTTCAGCAGAGTCCTACAAAACCTCCATCGAGTTTCCAGACGAGACCCTTCAATTCATCAAGTCACACCCACTCATGGACGCCTCGGTCCCCTCCATTGGAGACGAACCGTGGTTCACCAAAACAAGAGTCAG
Seq A exon
GTACAGACTAACAGCACTTGCAGTTGACAACACGGCAGGACCCCATAAGAATTACACAGTGGTTTTCATCGGCTCAGAAGCAGGCATCGTGCTAAAAGTTCTAGCCAAGACATCCCCGCTGTCTTTGAATGACAGCGTCCTGCTGGAGGAAATTGACGTTTTCAACCAGGCCAA
Seq C2 exon
GTGTTTATCCAGCAATGAGGACGATCGGCGAATTTTGTCTTTCCACCTAGATAAAGACAGTCACACACTTTATGTGGCCTTTTCCAGCTGTGTGGTAAGAATACCACTCAGCCGCTGCGAACGACACAGTTCCTGTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011533-'14-17,'14-15,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.1=100)
A:
PF0140314=Sema=FE(13.6=100)
C2:
PF0140314=Sema=PD(1.9=16.7),PF0143720=PSI=PU(12.9=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTTCAGCAGAGTCCTACA
R:
CAGCGGCTGAGTGGTATTCTT
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]