MmuEX6104537 @ mm10
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124658410-124659708:+
Coord C1 exon
chr2:124658410-124658565
Coord A exon
chr2:124658646-124658819
Coord C2 exon
chr2:124659568-124659708
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCGCCTCTTTCCCCCACTAGGTA
3' ss Score
11.09
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCCTGGCTGTTGTGCCAAACACGGCCTCGCAGAAGCTTACAAGACCTCCATCGACTTTCCAGATGACACCCTGGCTTTCATCAAGTCCCACCCGCTGATGGACTCTGCCGTCCCACCCATTGCCGATGAGCCCTGGTTCACAAAGACACGGGTCAG
Seq A exon
GTACAGGTTGACAGCCATCGAAGTGGACCGTTCAGCAGGGCCATACCAAAACTACACAGTCATCTTTGTTGGCTCTGAAGCTGGCGTGGTACTTAAAGTTTTGGCAAAGACCAGTCCTTTCTCTCTGAATGACAGTGTATTACTCGAAGAGATTGAAGCTTATAACCCAGCCAA
Seq C2 exon
GTGCAGCGCCGAGAGTGAGGAGGACAGAAAGGTGGTCTCATTACAGCTGGACAAGGATCACCATGCTTTATACGTGGCCTTCTCTAGCTGCGTGGTCCGCATCCCCCTCAGCCGCTGTGAGCGCTACGGATCGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200-'44-50,'44-44,46-50=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.2=100)
A:
PF0140314=Sema=FE(13.6=100)
C2:
PF0140314=Sema=PD(1.4=12.5),PF0143720=PSI=PU(11.7=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCAGATGACACCCTGGC
R:
TTTTACACGATCCGTAGCGCT
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types