BtaEX6053995 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016800 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:62871881-62873218:-
Coord C1 exon
chr10:62873063-62873218
Coord A exon
chr10:62872798-62872971
Coord C2 exon
chr10:62871881-62872021
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGATTCACCTCCTCTGGCAGGTA
3' ss Score
8.69
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCCTGGGTGTTGTGCAAAGCACGGTCTTGCGGAAGCATATAAAACCTCCATCGATTTCCCGGATGAAACCCTGTCATTCATCAAATCCCACCCCCTGATGGACTCGGCCGTCCCACCCATTGCCGACGAACCCTGGTTCACAAAGACTCGGATCAG
Seq A exon
GTACAGACTGACGGCCATCGCCGTCGACCATTCTGCCGGACCCCACCAGAACTACACAGTCATCTTTGTTGGCTCAGAAGCTGGCGTGGTGCTTAAAGTTTTGGCGAAGACCAGCCCTTTCTCTTTGAATGACAGCGTATTACTGGAAGAGATTGAAGCATACAACCATGCAAA
Seq C2 exon
GTGCAGTGCTGAAAATGAGGAGGACAGAAAGGTCATCTCATTACAGTTGGATAAAGACCATCATGCTTTATATGTGGCGTTCTCTAGCTGCGTTATCCGCATCCCCCTCAGTCGCTGTGAGCGTTATGGATCATGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016800-'18-13,'18-12,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.2=100)
A:
PF0140314=Sema=FE(13.6=100)
C2:
PF0140314=Sema=PD(1.4=12.5),PF0143720=PSI=PU(14.5=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGTGTTGTGCAAAGCA
R:
ATAACGCAGCTAGAGAACGCC
Band lengths:
251-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]