GgaEX1051701 @ galGal3
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
NA
Coordinates
chrZ:70743057-70745703:+
Coord C1 exon
chrZ:70743057-70743212
Coord A exon
chrZ:70744684-70744860
Coord C2 exon
chrZ:70745563-70745703
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTATTGTTATTCCAGATA
3' ss Score
6.29
5' ss Seq
AAAGTGTGT
5' ss Score
2.99
Exon sequences
Seq C1 exon
GCCTGGTTGTTGTGCTGGCTCTACATCATTAGAAAAATACGCAACCTCTAGTGAGTTCCCAGATGATACTCTGAACTTCATCAAAACACACCCACTGATGGATGAGGCTGTACCTTCCATTGTCAATCGACCCTGGTTCCTGAGAACGATGGTCAG
Seq A exon
ATACCGCCTGACCAAAATCACTGTTGACTCTGCTGCTGGGCCGTATAAGAACTACACTGTGGTTTTCTTGGGATCAGAGAAGGGAATCATCCTGAAGTTCTTGGCACGGACAGGAAACAGTGGTTTCCTAAATGACAGCCTTTTCCTGGAGGAGATGAACATCTACAATCCTGAAAA
Seq C2 exon
GTGCAGTTACGATGGCATGGAAGACAAGCGTATTGTGGCTATGCAGCTTGACAAACCCAGCAGTGCCCTTTATGTTGCCTTCTCCACCTGTGTCATCAAGGTTCCCTTGGGGCGGTGTGAGCGTCATGGTAAATGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'10-14,'10-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.1=100)
A:
PF0140314=Sema=FE(13.7=100)
C2:
PF0140314=Sema=PD(2.3=20.8),PF0143720=PSI=PU(14.3=18.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTTGTGCTGGCTCTACA
R:
GACACAGGTGGAGAAGGCAAC
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]