BtaEX0032319 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6676485-6680664:+
Coord C1 exon
chr17:6676485-6676687
Coord A exon
chr17:6677396-6677448
Coord C2 exon
chr17:6680478-6680664
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTTTAAAATATAGGCA
3' ss Score
6.45
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGGCCCAAGGTGTGTTGCTCGATTTGAGTATATTGGAGACCAGAAGGACGAGTTAAGTTTCTCAGAGGGAGAAATTATTATTCTTAAAGAGTATGTGAATGATGAGTGGGCGAGAGGAGAACTTGGAGACAGATCTGGAATCTTCCCCCTTAACTTTGTGGAACTCATTGAGGATCATCCCACTTCTGGTACAAATGTTTTAA
Seq A exon
GCACAAAGGTACCACCAAAGACCAAAAAAGAAGATTCTGGTGCAAATTCTCAG
Seq C2 exon
GAGAACAATCTTTGTGGAGAATGGTGCGAAGCTCTGCACAGTTTCATGGCAGAGACCAGTGAAGACCTATCCTTCAAGAGGGGAGACCGGATCCTGATCCTGGAGCGAGTGGACTCCGACTGGTACAAAGGCAGACTGCGGGACCGAGAGGGCATCTTCCCTGCCGTCTTTGTGCGGCCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.889 C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=WD(100=71.0)
A:
NO
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGAGTGGGCGAGAGGA
R:
CAGAGCTTCGCACCATTCTCC
Band lengths:
142-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development