RnoEX6010016 @ rn6
Exon Skipping
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185422689-185425503:+
Coord C1 exon
chr2:185422689-185422891
Coord A exon
chr2:185423284-185423336
Coord C2 exon
chr2:185425317-185425503
Length
53 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTTTTTTTAATGCAGGCA
3' ss Score
8.99
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGGCCAGAGGTGCATCGCTCGGTTTGAGTATATCGGAGACCAGAAGGATGAGTTAAGTTTCTCAGAAGGAGAAGTAATCGTTCTTACAGGGTATGTGAATGAGGAATGGGGCAGAGGAGAGATTCGAGATCGAACTGGGATCTTCCCCCTTAACTTTGTGGAACTTGTCGAGGATCACCCCATGTCTGGTGCGAATATTTTAA
Seq A exon
GCACAAAGGTGCCACCAAAGACCAAAAATGAAGACCCTGGCTCAAATTCTCAG
Seq C2 exon
GATAGCAGCCCTCCTGGAGAATGGTGCAGAGCCCTCCACAGTTTCACAGCAGAGACCAGCGAGGACTTAGCCTTCAAACGTGGAGATCGGATCCTGATCCTCGAGCGTCTAGACTCTGACTGGTACCGGGGCCGGCTGCATGGCAAGGAGGGCATCTTCCCAGCAGTGTTTGTACAGCCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752-'33-37,'33-34,34-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=1.000 C2=0.079
Domain overlap (PFAM):
C1:
PF146041=SH3_9=WD(100=71.0)
A:
NO
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGGGCAGAGGAGAGAT
R:
GTGAAACTGTGGAGGGCTCTG
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]