DreEX0065946 @ danRer10
Exon Skipping
Gene
ENSDARG00000088202 | sh3d19
Description
SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
Coordinates
chr1:23703626-23707669:-
Coord C1 exon
chr1:23707443-23707669
Coord A exon
chr1:23705207-23705250
Coord C2 exon
chr1:23703626-23703812
Length
44 bp
Sequences
Splice sites
3' ss Seq
GGTTGTGTTTTATTTTTCAGGAA
3' ss Score
10.91
5' ss Seq
GAGGTACCC
5' ss Score
7.84
Exon sequences
Seq C1 exon
AGGCCCTCGGTGTGTTGCCAGGTTTGACTTTGAGGGAGAGCAAGGTGATGAGCTCTCGTTCTTTGAAGATGATGTTATTCAGCTCAAGGAATATTTAGGAGAGGAATGGGCTCGTGGAGAAGTCAATGGTCACGTCGGCATTTTCCCTCTCAACTTTGTGGAGGTGATTGAGGATCTCCCTTCAGTCCCAGTGCAGAAATCTGCTCCCAATAAAATTGCATTGCCTG
Seq A exon
GAATGGCCAGCTCATCTACACAATCATCATACAGAGCCAGTGAG
Seq C2 exon
GCTGAAAGCAATGGTGCAGAATGGGCTGTAGCACTTTATGACTTCACAGCAGAGACCGAGGAGGATCTGCCCTTCCAGCAGGGAGACAGAATCCTGGTCACAGCTCATGTAGATGATGAATGGTGGAGCGGAAGAATCAATGGCAGAGAGGGCTTCTTCCCTAAAGCGTTTGTGGAGAGTGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088202_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.467 C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=WD(100=63.6)
A:
NO
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGGTCACGTCGGCATTT
R:
AAGTGCTACAGCCCATTCTGC
Band lengths:
141-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]