MmuEX6071678 @ mm10
Exon Skipping
Gene
ENSMUSG00000028082 | Sh3d19
Description
SH3 domain protein D19 [Source:MGI Symbol;Acc:MGI:1350923]
Coordinates
chr3:86120530-86123332:+
Coord C1 exon
chr3:86120530-86120732
Coord A exon
chr3:86121134-86121186
Coord C2 exon
chr3:86123146-86123332
Length
53 bp
Sequences
Splice sites
3' ss Seq
CCCCGCTTTTTTTTATGCAGGTA
3' ss Score
10.49
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGGCCCACGTTGTGTCGCACGGTTTGAGTATATTGGAGACCAGAAGGATGAGTTAAGTTTCTCAGAGGGAGAAGTCATTATTCTCACAGAGTACGTGAATGAAGAATGGGGCAGAGGAGAGATTCGAGACCGGAGCGGGATCTTCCCCCTGAATTTTGTGGAGCTTGTTGGGGATCACCCCACATCTGGTGCAAATATTTTAA
Seq A exon
GTACAAAGGTGCCACCAAAGACCAAAAACGAAGACCCTGGCTCAAATTCTCAG
Seq C2 exon
GACAGCAGCCCTCCTGGAGAATGGTGCAAAGCTCTTCACAGTTTCACAGCAGAGACCAGCGAGGACTTACCCTTCAAACGCGGAGATCGGATCCTGATCCTTGAACGTCTAGATTCCGACTGGTACCGGGGCCGACTGCATGACAGGGAGGGCATCTTCCCAGCAGTGTTTGTGCAACCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028082-'51-46,'51-44,55-46=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=1.000 C2=0.079
Domain overlap (PFAM):
C1:
PF146041=SH3_9=WD(100=71.0)
A:
NO
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCTTGTTGGGGATCAC
R:
ATCCGATCTCCGCGTTTGAAG
Band lengths:
138-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types