GgaEX0014976 @ galGal4
Exon Skipping
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32692064-32693220:-
Coord C1 exon
chr4:32693033-32693220
Coord A exon
chr4:32692747-32692796
Coord C2 exon
chr4:32692064-32692250
Length
50 bp
Sequences
Splice sites
3' ss Seq
GGTTGTTCTTTACTACATAGGTA
3' ss Score
7.28
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGGCCCAAGATGTGTAGCACGATTTGAATACATCGGAGATCAGAGAGACGAACTCAGTTTTTCAGAAGGTGAAACAATTATCCTTAAAGAATATGTAAATGAAGAGTGGGCCAAAGGAGAACTCAGAGGCACGTCTGGAATTTTCCCCTTGAACTTTGTGGAAGTAATTGAAGATCTGCCTGGAAAAG
Seq A exon
GTACAGGAGGAGCACTGAAGAAAAAAGTGGAGGTTTCTTCTCCCCTTCAG
Seq C2 exon
GACAACCGATGCTCAGTAGAGTGGTGTGAGGCACTTCATGATTTTACAGCAGAAACCAAAGATGACTTATCCTTTAGAAAGGGAGACTACATCCAAATATTGGAACAAGTAGACTCTGAATGGTACAGAGGAAGACTGAATGAAAAGGAAGGGATTTTCCCAGCAGTTTTTGTTCAGACCCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=WD(100=74.2)
A:
NO
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGGAGAACTCAGAGGC
R:
AGTCATCTTTGGTTTCTGCTGT
Band lengths:
146-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]