GgaEX0014976 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:34378732-34379801:-
Coord C1 exon
chr4:34379701-34379801
Coord A exon
chr4:34379415-34379464
Coord C2 exon
chr4:34378732-34378918
Length
50 bp
Sequences
Splice sites
3' ss Seq
GGTTGTTCTTTACTACATAGGTA
3' ss Score
7.28
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGAATATGTAAATGAAGAGTGGGCCAAAGGAGAACTCAGAGGCACGTCTGGAATTTTCCCCTTGAACTTTGTGGAAGTAATTGAAGATCTGCCTGGAAAAG
Seq A exon
GTACAGGAGGAGCACTGAAGAAAAAAGTGGAGGTTTCTTCTCCCCTTCAG
Seq C2 exon
GACAACCGATGCTCAGTAGAGTGGTGTGAGGCACTTCATGATTTTACAGCAGAAACCAAAGATGACTTATCCTTTAGAAAGGGAGACTACATCCAAATATTGGAACAAGTAGACTCTGAATGGTACAGAGGAAGACTGAATGAAAAGGAAGGGATTTTCCCAGCAGTTTTTGTTCAGACCCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081-'17-21,'17-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGGAGAACTCAGAGGC
R:
AGTCATCTTTGGTTTCTGCTGT
Band lengths:
146-196
Functional annotations
There are 0 annotated functions for this event