BtaEX0032345 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010626 | SH3GLB2
Description
Bos taurus SH3-domain GRB2-like endophilin B2 (SH3GLB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076802]
Coordinates
chr11:99514046-99519600:-
Coord C1 exon
chr11:99519459-99519600
Coord A exon
chr11:99518337-99518465
Coord C2 exon
chr11:99514046-99514179
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTGGCTGCTGTCTCCCACAGGCG
3' ss Score
10.7
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
TTCACAGAGGAGAAATTCGGCCAGGCCGAGAAGACCGAGCTCGACGCCCACTTTGAGAGCCTCCTGGCGCGGGCGGACAGCACCAAGAACTGGACCGAGAAGATCTTGAGGCAGACAGAGGTGCTGCTGCAGCCCAACCCCA
Seq A exon
GCGCCCGAGTGGAGGAGTTCCTGTACGAGAAGCTGGACAGGAAGGTGCCCTCACGGGTCACCAACGGGGAGCTGCTGGCGCAGTACATGGCCGAGGCGGCCAGTGAGCTGGGGCCCACCACCCCCTACG
Seq C2 exon
GGAAGACGCTGATCAAGGTGGCGGAAGCAGAAAAGCACCTGGGAGCGGCCGAGAGAGATTTCATCCACACGGCCTCCATCAACTTCCTCACGCCCCTGCGCAACTTCCTGGAAGGGGACTGGAAGACGATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010626_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(17.0=100)
A:
PF0311413=BAR=FE(15.6=100)
C2:
PF0311413=BAR=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAGAAATTCGGCCAGG
R:
AGTCCCCTTCCAGGAAGTTGC
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development