GgaEX0006089 @ galGal3
Exon Skipping
Gene
ENSGALG00000004512 | SHLB2_CHICK
Description
NA
Coordinates
chr17:6002933-6004840:-
Coord C1 exon
chr17:6004699-6004840
Coord A exon
chr17:6004227-6004355
Coord C2 exon
chr17:6002933-6003066
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGGTGACTTACTCATTTCAGGTG
3' ss Score
7.63
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTTACAGAAGAAAAGTTGGGCCAGGCTGAGAAGACTGAATTAGATGCCCACTTTGAAAACCTTCTGGCCAGGGCAGACTCAACTAAGAACTGGACAGAGAAGATCTTACGCCAGACTGAGGTTCTGCTACAGCCAAACCCTA
Seq A exon
GTGCCAGAGTAGAAGAATTCCTCTATGAGAAACTTGACAGGAAGGTACCTTCCCGGGTCACCAATGGGGAGCTGCTGGCACAGTACATGACAGAAGCAGCTAATGACTTTGGGCCAGGGACACCTTATG
Seq C2 exon
GGAAGACCTTGATAAAAGTTGGAGAGACTCAAAGGCGCTTAGGTGCAGCAGAACGGGACTTCATCCACTCTGCCTCCATCAACTTCCTGACACCACTGCGCAACTTCCTGGAGGGGGACTGGCGAACCATATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004512-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(17.1=100)
A:
PF0311413=BAR=FE(15.6=100)
C2:
PF0311413=BAR=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAAAGTTGGGCCAGGCT
R:
CAGTCCCCCTCCAGGAAGTTG
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event