HsaEX0058026 @ hg19
Exon Skipping
Gene
ENSG00000148341 | SH3GLB2
Description
SH3-domain GRB2-like endophilin B2 [Source:HGNC Symbol;Acc:10834]
Coordinates
chr9:131777050-131784702:-
Coord C1 exon
chr9:131784561-131784702
Coord A exon
chr9:131783370-131783498
Coord C2 exon
chr9:131777050-131777183
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGGCTGCTGTCTCCCCACAGGTG
3' ss Score
13.92
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTCACGGAGGAGAAATTTGGCCAGGCTGAGAAGACTGAGCTTGATGCCCACTTTGAAAACCTTCTGGCCCGGGCAGACAGCACCAAGAACTGGACAGAGAAGATCTTGAGGCAGACAGAGGTGCTGCTGCAGCCCAACCCCA
Seq A exon
GTGCCCGAGTGGAGGAGTTCCTGTATGAGAAGCTGGACAGGAAGGTCCCCTCAAGGGTCACCAACGGGGAGCTGCTGGCTCAGTACATGGCAGACGCGGCCAGTGAGCTGGGGCCGACCACCCCCTATG
Seq C2 exon
GGAAGACACTGATCAAGGTGGCAGAAGCTGAAAAGCAACTGGGAGCCGCGGAGAGGGATTTTATCCACACGGCCTCCATCAGCTTCCTCACACCCTTGCGCAACTTCCTGGAGGGGGACTGGAAGACCATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341-'2-10,'2-2,3-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(16.8=100)
A:
PF0311413=BAR=FE(15.4=100)
C2:
PF0311413=BAR=FE(17.3=100),PF0313112=bZIP_Maf=PU(30.0=60.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAATTTGGCCAGGCTG
R:
CAGTCCCCCTCCAGGAAGTTG
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)