DreEX0066011 @ danRer10
Exon Skipping
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31071708-31089758:-
Coord C1 exon
chr5:31089581-31089758
Coord A exon
chr5:31078160-31078288
Coord C2 exon
chr5:31071708-31071841
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGATGTGAATGTTTGTTCAGGTG
3' ss Score
6.73
5' ss Seq
ATGGTTCGT
5' ss Score
6.1
Exon sequences
Seq C1 exon
CATTAAGCTCCAGGTTGCGCTGTCGAATCAGCTTCTTCCTGCACAATCGATCCCGTTGCAGGGACAACCAACAAGCTGATGTTGCTGAAACGCACACAGTGAAAACGCTGACACGATGGATTTCAATGTCAAGAAACTAGCGTCGGACGCAGGTGTCTTCTTCACTCGGGCAGTCCAG
Seq A exon
GTGCCCGTATTGAGGAGTTCTTCTATGAGAAACTAGACAAAAAGATCCCATCCAGAATCACCAATGCAGAGCTGCTGGGACAGTACATGCAGGATGCAGCGAAAGACTTTGGGCCAGGATCTCCATATG
Seq C2 exon
GGAGTACATTGATCACTGTTGGAGAGTATCAAAAGAGGCTGGGTGGATCCGAGCGGGAATTTCTACAAACATCAGCCATCAACTTCCTTACACCTCTGAGGAATTTTCTGGAGGGTGACTGGAAAACCATTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470_MULTIEX1-3/7=C1-4
Average complexity
C2
Mappability confidence:
93%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=PU(6.1=71.4)
A:
PF0311413=BAR=FE(17.5=100)
C2:
PF0311413=BAR=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGACAACCAACAAGCTGA
R:
TGGTTTTCCAGTCACCCTCCA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]