RnoEX6016302 @ rn6
Exon Skipping
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8914952-8920124:-
Coord C1 exon
chr3:8919983-8920124
Coord A exon
chr3:8919274-8919402
Coord C2 exon
chr3:8914952-8915085
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGGCTGCTGTCTCCCTACAGGTG
3' ss Score
11.87
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTCACAGAAGAGAAGTTTGGCCAAGCTGAGAAGACTGAACTTGATGCCCACTTTGAAAACCTCCTAGCTCGGGCAGACAGCACCAAGAACTGGACGGAGCGGATCCTGAGGCAGACTGAGGTGCTGCTGCAGCCCAATCCCA
Seq A exon
GTGCTCGAGTGGAGGAGTTCCTGTATGAGAAGCTGGACAGAAAGGTGCCCTCAAGAGTCACCAATGGGGAGCTGCTGGCTCAGTACATGGCAGAGGCAGCCAGCGAACTGGGCCCCAACACTCCCTATG
Seq C2 exon
GGAAGACACTGATGAAGGTGTCAGAAGCTGAAAAGCGTCTGGGAGCCGCAGAACGGGATTTCATTCACACTGCCTCCCTCAGCTTCCTCACACCCTTGCGCAACTTCCTGGAAGGGGACTGGAAAACGATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295-'5-7,'5-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.106
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(17.0=100)
A:
PF0311413=BAR=FE(15.6=100)
C2:
PF0311413=BAR=PU(29.9=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAGCTGAGAAGACTGA
R:
TTCCAGTCCCCTTCCAGGAAG
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]