MmuEX6100256 @ mm10
Exon Skipping
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30350584-30355402:-
Coord C1 exon
chr2:30355261-30355402
Coord A exon
chr2:30354853-30354981
Coord C2 exon
chr2:30350584-30350717
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGACTGCTATCTCCCTACAGGTG
3' ss Score
12.75
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TTCACAGAGGAGAAGTTTGGCCAGGCTGAGAAGACGGAGCTTGACGCCCACTTTGAAAACCTCCTAGCTCGGGCAGACAGCACCAAGAACTGGACAGAGCGGATCCTGAGGCAGACCGAGGTGCTGCTGCAGCCCAACCCCA
Seq A exon
GTGCTCGAGTGGAGGAGTTCCTATATGAGAAGCTGGACAGAAAGGTGCCCTCGAGAGTCACCAATGGGGAGCTGCTGGCTCAGTACATGGCGGAGGCAGCCAGCGAGCTGGGCCCCAGCACTCCCTACG
Seq C2 exon
GGAAGACGCTGATCAAGGTGTCAGAAGCTGAGAAGCGCCTCGGAGCAGCAGAGCGGGATTTCATTCACACTGCCTCCCTCAGCTTCCTCACACCCCTGCGGAACTTCCTAGAGGGGGACTGGAAAACGATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-'11-10,'11-7,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(17.0=100)
A:
PF0311413=BAR=FE(15.6=100)
C2:
PF0311413=BAR=FE(17.3=100),PF0313112=bZIP_Maf=PU(28.4=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGAAGACGGAGCTTGAC
R:
ATCGTTTTCCAGTCCCCCTCT
Band lengths:
248-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types