BtaEX0033589 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:397455-423824:-
Coord C1 exon
chr20:423692-423824
Coord A exon
chr20:399418-399486
Coord C2 exon
chr20:397455-397526
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCACCTCTCTTTCAGGTA
3' ss Score
11.75
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
GCAACGATGAGAGCAGCTGCCAGCTGGGTCCGCGCTGCCCCGAGCAGTGCACCTGTGTGGAGACGGTGGTGCGCTGCAGCAACCGGGGGCTCCGTGCCCTTCCCAAAGGCATCCCCAAGGACGTGACGGAGCT
Seq A exon
GTACCTGGAAGGAAACCACTTAACAGCCGTGCCCAAGGAGCTATCCAGCTTCCGACATCTGACACTCAT
Seq C2 exon
TGACCTGAGCAACAACAGCATCGGCATGCTGACCAACTACACCTTCAGCAACATGTCTCACCTCTCTACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746-'17-18,'17-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(6.1=6.7)
A:
PF127992=LRR_4=FE(46.9=100)
C2:
PF127992=LRR_4=PD(44.9=88.0),PF138551=LRR_8=PU(8.6=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGATGAGAGCAGCTGCC
R:
GTAGTTGGTCAGCATGCCGAT
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development