DreEX0073481 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24239656-24244662:-
Coord C1 exon
chr14:24244527-24244662
Coord A exon
chr14:24240943-24241011
Coord C2 exon
chr14:24239656-24239727
Length
69 bp
Sequences
Splice sites
3' ss Seq
GATTTTTCTTACCATTTCAGATA
3' ss Score
10.17
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GTGCGGAAGAGAATGTGTGCCTGCCGTCAGCCCCTCGATGTCCAGAATCCTGCACATGCTCGGAAACCGTGGTGCGCTGTAGTAACCGTGGGCTGCGTTCTCTGCCTAAGACTATCCCTAAAGATACAACTGAACT
Seq A exon
ATACTTGGAAGGAAACCTCCTCACATCCGTTCCCAAAGAGCTTCCTAATCTGAAACAACTGACACTCCT
Seq C2 exon
AGACCTTAGTAATAACAGCATCAGTCATCTTGCCCCTCTCACCTTCAGCAACATGACACAGCTCGCCACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268-'25-24,'25-23,26-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=60.9),PF127992=LRR_4=PU(4.7=4.3)
A:
PF127992=LRR_4=FE(53.5=100)
C2:
PF127992=LRR_4=PD(39.5=68.0),PF138551=LRR_8=PU(6.7=16.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCGATGTCCAGAATCCT
R:
CGAGCTGTGTCATGTTGCTGA
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]