MmuEX6084744 @ mm9
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35447404-35464673:+
Coord C1 exon
chr11:35447404-35447536
Coord A exon
chr11:35462535-35462603
Coord C2 exon
chr11:35464602-35464673
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCACCTCTCTTTCAGGTA
3' ss Score
11.75
5' ss Seq
TATGTAAGG
5' ss Score
4.37
Exon sequences
Seq C1 exon
GCAATGAGGAGAGCAGCTGCCAGCTGAGTCCACGCTGCCCTGAGCAGTGCACCTGTGTGGAGACGGTGGTCCGATGCAGCAACAGGGGTCTCCATGCCCTCCCCAAAGGCATGCCAAAGGATGTGACTGAACT
Seq A exon
GTACCTGGAAGGAAACCATTTAACAGCAGTGCCCAAAGAGTTGTCTGCCTTCCGACAGCTGACCCTTAT
Seq C2 exon
TGACCTGAGCAACAACAGCATCAGCATGCTGACCAATCACACCTTCAGCAACATGTCCCACCTCTCCACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2)
A:
PF138551=LRR_8=PU(8.2=20.8)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAGGAGAGCAGCTGCC
R:
GGTGTGATTGGTCAGCATGCT
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: