GgaEX6011072 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3955192-3964754:+
Coord C1 exon
chr13:3955192-3955324
Coord A exon
chr13:3963470-3963538
Coord C2 exon
chr13:3964683-3964754
Length
69 bp
Sequences
Splice sites
3' ss Seq
AATGTGCCTTTTTTTTTCAGATA
3' ss Score
11.25
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTAATGATGAAAGCAGCTGCTTGCTTTCTCCTCCCTGTCCTTCCCAGTGTACCTGTGTGGACTCGGTGGTACGTTGCAGTAACAAAGGGCTGCGAGTAATGCCCAAAGGAATTCCCAAAGATGTGACTGAGCT
Seq A exon
ATACCTGGAAGGGAACCACCTGACTGCTGTGCCGAAGGGACTCTCTGCCTTCAGGCACCTGACACTGAT
Seq C2 exon
TGATTTGAGCAACAACAGCATAAGTGTATTGGCCAATTATACCTTCAGCAACATGACCCAGTTATCAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'29-50,'29-49,30-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(6.8=6.7)
A:
PF127992=LRR_4=FE(52.3=100)
C2:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTGCTTTCTCCTCCCTG
R:
CTGGGTCATGTTGCTGAAGGT
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]