MmuEX6084744 @ mm10
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35633902-35651171:+
Coord C1 exon
chr11:35633902-35634034
Coord A exon
chr11:35649033-35649101
Coord C2 exon
chr11:35651100-35651171
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCACCTCTCTTTCAGGTA
3' ss Score
11.75
5' ss Seq
TATGTAAGG
5' ss Score
4.37
Exon sequences
Seq C1 exon
GCAATGAGGAGAGCAGCTGCCAGCTGAGTCCACGCTGCCCTGAGCAGTGCACCTGTGTGGAGACGGTGGTCCGATGCAGCAACAGGGGTCTCCATGCCCTCCCCAAAGGCATGCCAAAGGATGTGACTGAACT
Seq A exon
GTACCTGGAAGGAAACCATTTAACAGCAGTGCCCAAAGAGTTGTCTGCCTTCCGACAGCTGACCCTTAT
Seq C2 exon
TGACCTGAGCAACAACAGCATCAGCATGCTGACCAATCACACCTTCAGCAACATGTCCCACCTCTCCACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'48-51,'48-49,51-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(7.7=6.7)
A:
PF138551=LRR_8=PU(8.2=20.8)
C2:
PF127992=LRR_4=PD(30.8=48.0),PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
ENSMUST00000069837fB17070
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAGGAGAGCAGCTGCC
R:
GGTGTGATTGGTCAGCATGCT
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types