RnoEX6046872 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20445082-20461863:+
Coord C1 exon
chr10:20445082-20445214
Coord A exon
chr10:20460589-20460657
Coord C2 exon
chr10:20461792-20461863
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCACCTCTCTTTCAGGTA
3' ss Score
11.75
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
GCAATGAGGAGAACAGCTGTCAGCTGAGTCCACGCTGCCCCGAGCAGTGTACCTGTGTGGAGACAGTGGTGCGATGCAGCAACAGGGGTCTCCGCACCCTCCCCAAGGGCATGCCAAAGGACGTGACTGAACT
Seq A exon
GTACCTGGAAGGAAATCATTTAACGGCGGTGCCCAAAGAATTGTCCACCTTCCGACAGCTGACACTAAT
Seq C2 exon
TGACCTGAGCAACAACAGCATCAGTATGCTGACCAATCACACCTTCAGCAACATGTCCCACCTCTCCACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-'20-25,'20-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2)
A:
PF138551=LRR_8=PU(8.2=20.8)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAGAACAGCTGTCAGC
R:
TGAAGGTGTGATTGGTCAGCA
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]