BtaEX0034739 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67754666-67759446:+
Coord C1 exon
chr5:67754666-67754815
Coord A exon
chr5:67756710-67756814
Coord C2 exon
chr5:67759339-67759446
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATTCCAACTTGCTCTACAGCTT
3' ss Score
7.29
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CCTGCCCTGGAGGCCCAGATACCCCATGTAATAACCGGGGTATCTGCCTGGATCCGTACTCACCCAGCAGACAGTGTCAATGCAACAGCGGCTTCAACGGGACAACATGTGAGCTGTGCTGGCCGGGGAGATTCGGGCCTGACTGCCAGC
Seq A exon
CTTGTGGCTGCTCAGACCATGGACAGTGCGATGACGGGATCACAGGCTCTGGAGAGTGCATCTGCGAGACAGGGTGGACGGGCCGCTTCTGCGACACCCAGACAG
Seq C2 exon
CTTTGGCTCCCGTGTGCACGCCTCCTTGTTCTGCTCATGCTACCTGTAAGAACAACAACACATGCGAATGTAACCTGAACTATGAAGGAGACGGAATAACGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'59-65,'59-64,61-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.6)
A:
NO
C2:
PF129472=EGF_3=WD(100=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCCAGATACCCCATGTA
R:
TGTGCACGTTATTCCGTCTCC
Band lengths:
248-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development