GgaEX1055791 @ galGal4
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54932657-54956647:-
Coord C1 exon
chr1:54956591-54956647
Coord A exon
chr1:54937109-54937213
Coord C2 exon
chr1:54932657-54932776
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTGTGCATTTCTTTTGCAGCCT
3' ss Score
9.94
5' ss Seq
TAGGTATCT
5' ss Score
4.28
Exon sequences
Seq C1 exon
GAAAAGTGCAGAATTTGTTCGCAACCATCAAGTTGCCCCCCAGGAACAAAAGAAATA
Seq A exon
CCTGTGAATGCAAGAACAACGGGCAGTGTGAGGAAGGATATTCAGGAACAGGACGATGTTTCTGTGAGACAGGATGGACTGGCCGGCTGTGTGAAAACAAGCTAG
Seq C2 exon
AAAATCATGGCTTACTCCAACAGCTCTCGGAAAGGGAGAGCATTCCTGCGGTACCTCACCGACCTGTCAGTGCGTGCCACACTCTTCGCTCCAAATGACAGTGGACTAAGGGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751_MULTIEX1-21/27=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PD(0.1=0.0)
C2:
PF0246917=Fasciclin=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAATTTGTTCGCAACCA
R:
TGATTTTCCCTTAGTCCACTGTCA
Band lengths:
171-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]