RnoEX6031009 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27386028-27390417:-
Coord C1 exon
chr7:27390268-27390417
Coord A exon
chr7:27388744-27388848
Coord C2 exon
chr7:27386028-27386135
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATTACTGATTTCTCTTACAGCCT
3' ss Score
9.11
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCTGCCCTGGAGGACCAGATACACCGTGTAACAACCGGGGCATGTGCCGCGATCTGTACACACCCATGGGACAGTGCCTATGCCACACCGGCTTCAACGGGACAGCCTGCGAGCTCTGCTGGCATGGGAGATTTGGGCCTGACTGTCAGC
Seq A exon
CCTGCAGCTGCTCCGAGCATGGACAGTGTGATGAGGGGATCACAGGCTCCGGGGAGTGCCTCTGTGAAACAGGGTGGACAGGCCGCTTCTGTGACACTCCCACAG
Seq C2 exon
CTGTGATTCCAGTGTGCACACCTGTTTGCTCCGTGCACGCCACCTGTACGGAGAACAACACGTGTGTGTGTAACTTGAACTACGAAGGTGACGGACTCACGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'73-70,'73-69,74-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129472=EGF_3=WD(100=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACCAGATACACCGTG
R:
TGAGTCCGTCACCTTCGTAGT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]