GgaEX1055791 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56830679-56833272:-
Coord C1 exon
chr1:56833123-56833272
Coord A exon
chr1:56831194-56831298
Coord C2 exon
chr1:56830679-56830786
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTGTGCATTTCTTTTGCAGCCT
3' ss Score
9.94
5' ss Seq
TAGGTATCT
5' ss Score
4.28
Exon sequences
Seq C1 exon
CTTGCCCAGGGGGTCCAGAGACACCATGCAATAGCCATGGCTACTGTGACGATGGCTACACTGGGACAGGAGAGTGCCACTGCTATAGTGGCTTCAACGGGACTTCATGTGAGCTGTGCTTGCCAGGCAGATATGGCTCCAGCTGCAAGC
Seq A exon
CCTGTGAATGCAAGAACAACGGGCAGTGTGAGGAAGGATATTCAGGAACAGGACGATGTTTCTGTGAGACAGGATGGACTGGCCGGCTGTGTGAAAACAAGCTAG
Seq C2 exon
CCTTGACACCAGTGTGTTCTCCAAGCTGCTCTGCCAACGCTGTCTGCATGGAGAACAACACGTGCCAGTGCAAGCCACTTTACAATGGGGATGGAATCACGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'55-57,'55-56,56-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGAGACACCATGCAAT
R:
GCACGTGATTCCATCCCCATT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]