MmuEX6050473 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86858108-86861517:-
Coord C1 exon
chr10:86861368-86861517
Coord A exon
chr10:86859744-86859848
Coord C2 exon
chr10:86858108-86858215
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGATTTCTCTTACAGCCT
3' ss Score
11.01
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CCTGCCCTGGAGGACCAGACACACCGTGTAACAACCGGGGCATGTGTTATGATCAGTACAAACCCACAGGACAGTGCCAATGTCATACTGGTTTCAACGGGACAGCCTGTGAGCTCTGCTTGCCTGGGAGATTTGGTCCTGACTGTCAAC
Seq A exon
CCTGTGGCTGCTCTGAGCATGGGCAGTGTGACGAGGGGATCACAGGCTCCGGGCAGTGCCTCTGTGAAGCAGGGTGGACAGGCCGCTTCTGTGATGCTCCCACAG
Seq C2 exon
TTGTGATTCCAGTGTGCATACCTGCTTGTTCCATGCACGCAACCTGTATGGAGAACAACACATGTGTGTGTAACTTGAATTACGAAGGTGACGGAATCACATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'80-87,'80-86,81-87
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.6)
A:
NO
C2:
PF129472=EGF_3=WD(100=75.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACCAGACACACCG
R:
CTGTGCATGTGATTCCGTCA
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types