MmuEX6050473 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86320853-86324262:-
Coord C1 exon
chr10:86324113-86324262
Coord A exon
chr10:86322489-86322593
Coord C2 exon
chr10:86320853-86320960
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGATTTCTCTTACAGCCT
3' ss Score
11.01
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CCTGCCCTGGAGGACCAGACACACCGTGTAACAACCGGGGCATGTGTTATGATCAGTACAAACCCACAGGACAGTGCCAATGTCATACTGGTTTCAACGGGACAGCCTGTGAGCTCTGCTTGCCTGGGAGATTTGGTCCTGACTGTCAAC
Seq A exon
CCTGTGGCTGCTCTGAGCATGGGCAGTGTGACGAGGGGATCACAGGCTCCGGGCAGTGCCTCTGTGAAGCAGGGTGGACAGGCCGCTTCTGTGATGCTCCCACAG
Seq C2 exon
TTGTGATTCCAGTGTGCATACCTGCTTGTTCCATGCACGCAACCTGTATGGAGAACAACACATGTGTGTGTAACTTGAATTACGAAGGTGACGGAATCACATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'61-66,'61-65,62-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.6)
A:
PF126612=hEGF=WD(100=36.1)
C2:
PF129472=EGF_3=WD(100=75.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACCAGACACACCG
R:
CTGTGCATGTGATTCCGTCA
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: