BtaEX0034742 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67692435-67698563:+
Coord C1 exon
chr5:67692435-67692530
Coord A exon
chr5:67694790-67694885
Coord C2 exon
chr5:67698516-67698563
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCATCTCCTTTGTATCAGGCA
3' ss Score
7.99
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AATGAGTGTGAGTGCAAAAAAGGATTTCAAGGCAATGGGATTGACTGTGAACCAATAACATCATGCTTAGAACAAACTGAGAAATGTCATCCACTG
Seq A exon
GCAACCTGTCAGCTTACTTCCTCCGGCATCTGGAGTTGTGTTTGCCAAGAGGGCTATGAAGGAGACGGCCTTCTGTGCTATGGAAATGCTGCAGTG
Seq C2 exon
GAATTGTCCTTTCTCTCCGCTGCAGCTGTATTTAACCAGTGGATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(42.9=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGATTTCAAGGCAATGGGA
R:
TTTATCCACTGGTTAAATACAGCTGC
Band lengths:
127-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development