DreEX6001346 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10741320-10742446:+
Coord C1 exon
chr4:10741320-10741415
Coord A exon
chr4:10741493-10741588
Coord C2 exon
chr4:10742399-10742446
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCCACATTCCCATAGGCC
3' ss Score
9.84
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGACTGTGCTTGCAAAAGTGGTTACCACGGCAACGGGAGGGAGTGTGAACCTGTCAATCAGTGTGTGGAGCAGAAGGGTGGATGCCATTTCCTG
Seq A exon
GCCACCTGCCAGTTCCTGAACCCAGATGGATGGCATTGTGTGTGTGAAGATGGCTATGCTGGTGACGGGAAAATTTGTTATGGGACTTTACTGCAG
Seq C2 exon
GAGGTGTCGACAAACCCAGATCTTCTGGGTTTTAACCAGTGGATCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(41.7=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTGTGCTTGCAAAAGTGG
R:
GGAGATCCACTGGTTAAAACCCA
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]